University of Chicago Computer Science Dept.
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Please feel free to suggest speakers to the program committee listed on the contact page, linked above.

Schedule for Academic Year 2002-2003

Sep. 16, 2002
2:30 pm
Rick Jensen
Professor of Physics, Wesleyan University
Head of the Wesleyan Nonlinear Research Group
Shotgun Microarrays: High-throughput Validation of Gene Expression Changes Using Multiple Platforms
Oct 14, 2002
2:30 pm
Joachim Frank
Investigator, Howard Hughes Medical Institute
Director, Structural and Cell Biology Program
Professor, Biomedical Sciences.
Wadsworth Center, New York State Department of Health
Title: The dynamics of the ribosome as inferred by cryo-EM: induced and self-organized motions
Nov. 18, 2002
2:30 pm
Anya Tsalenko
Agilent Technologies
Common approaches to analysis of gene expression and SNP genotype data for complex diseases.
New date
Dec. 16, 2002
2:30 pm
Ross Overbeek
Vice President of Bioinformatics and Founder
Integrated Genomics
Characterizing Genes: the Emerging Role of Bioinformatics
Jan 13, 2003
Special Event
Agenda for Informatics in the Biological Sciences
Announcement
Agenda
Jan 13, 2003
Cancelled
Ming-Yang Kao
Professor of Computer Science
McCormick School of Engineering and Applied Science
Northwestern University
Title: to be announced
Apr. 24
3:00 PM
CLSC 101
Michael Eisen
Department of Genome Sciences, LBNL
Department of Molecular and Cell Biology, UC Berkeley
Cracking the Eukaryotic cis-Regulatory Code
Postponed
Bob Franza
Research Professor, Department of Molecular Biotechnology
University of Washington
Title: to be announced

Schedule for Academic Year 2001-2002

Feb. 11, 2002
2:30 pm
Tim Baker
Professor, Department of Biological Sciences
Purdue
Exploring how Viruses Infect Cells as Visualized Through the 'Eyes' of Electron cryo-Microscopy and 3D Image Reconstruction
Apr. 15, 2002
Eleazar Eskin
Columbia University
Sparse Sequence Modeling Applied to Computational Biology and Intrusion Detection
May 20, 2002
2:30 pm
Larry Hunter
Director of Center for Computational Pharmacology and
Associtate Professor of Pharmacology,
Assoc. Prof. of Preventative Medicine,
University of Colorado Health Sciences Center and
Assoc. Prof. of Computer Science, Un. of Colorado, Boulder.
The Era of Biognostic Machinery

Schedule for Academic Year 2000-2001

Sept 25, 2000
2:30 pm
Bud Mishra
Departments of Computer Science & Mathematics
Courant Institute of Mathematical Sciences
New York University
0-1 Laws for Single Molecules
Nov 6, 2000
2:30 pm
Alan S. Lapedes
Complex Systems Group Los Alamos National Laboratory
Networks of Interactions in Molecular Biology, A Case Study
Nov 27, 2000
2:30 pm
Lee Makowski
Biosciences Division
Argonne National Laboratory
Molecular Recognition in Protein-Small Molecule Interactions
Jan 22, 2001
2:30 pm
Wah Chiu
Department of Biochemistry
Baylor College of Medicine
Hybrid of Electron Cryo-Microscopy and Bioinformatics to Reveal Protein Folds in Domains of Biological Machines
Jan 29, 2001
2:30 pm
Thomas Anantharaman
Department of Biostatistics and Medical Informatics
University of Wisconsin Medical School
A Probabilistic Analysis of False Positives in Genomic Map Alignment and Validation
Feb 12, 2001
2:30 pm
Partha Niyogi
Department of Computer Science
The University of Chicago
Kernel Based Machines for Pattern Classification
Feb 26, 2001
2:30 pm
Alberto Maria Segre
Department of Management Sciences, and
Department of Computer Science
The University of Iowa
HOPS: A Distributed Hybrid Optimization Technique for Protein Structure Prediction
March 6, 2001
2:30 pm
Bud Mishra
Departments of Computer Science & Mathematics
Courant Institute of Mathematical Sciences
New York University
Algorithms for Detecting Gene Copy Number Fluctuations in Tumor Cells by Microarrays
Apr 19, 2001
2:30 pm
William Pearson
Department of Biochemistry and Molecular Genetics
University of Virginia
From Sequences to Science: What Evolution Can Tell You about Biochemical Function
Apr 30, 2001
2:30 pm
Tao Pan
Department of Biochemistry and Molecular Biology
University of Chicago
Linking enzyme studies to bioinformatics: The genome profile for the substrates of an RNA processing enzyme
May 14, 2001
2:30 pm
Daniel Chasman
Variagenics
Cambridge, MA
Predicting the Functional Consequences of Non-Synonymous Single Nucleotide Polymorphisms: Structure-Based Assessment of Amino Acid Variation
June 21, 2001
2:30 pm
Eugene Koonin
Comparative genomics and fundamental problems in evolutionary biology


Schedule for Academic Year 1999-2000

Oct. 4, 1999
3 pm
John Quackenbush
The Institute for Genomic Research
Whole Genome Functional Analysis in Humans Using DNA Microarrays
Nov 12, 1999
3 pm
Rick Lathrop
Department of Information and Computer Science
University of California, Irvine
The Protein Threading Approach to Protein Structure Prediction
Nov 29, 1999
3 pm
Hong Zhou
Department of Pathology and Laboratory Medicine
University of Texas Medical School
Parallel Computing Applied to High-Resolution 3D Structure Determination of Supra-molecular Complexes
Dec 14, 1999
3 pm
Jennifer Steinbachs
The Field Museum of Natural History, Chicago, Illinois
Exploring the Tree of Life: Molecular Systematics at the Field Museum
Feb 7, 2000
3 pm
Bill Grundy
Department of Computer Science
Columbia University
Analysis of Microarray Gene Expression Data Using Support Vector Machines
Feb 28, 2000
3 pm
Dan Brown
Department of Computer Science, Cornell University
Two Design Changes for Genetic Mapping Projects: Theoretical Justification and Experimental Results
Mar 27, 2000
3 pm
Dan Marinescu
Department of Computer Science
Purdue University
Computational Challenges for 3D Atomic Structure Determination of Large Macromolecules using Cryo-TEM
Apr 10, 2000
3 pm
Russ Altman
Departments of Medical Informatics, Medicine and Computer Science
Stanford University
Structured representations for biological data: from ribosomes to Pharmacogenetics
May 22, 2000
3 pm
Nancy Cox
Department of Human Genetics
The University of Chicago
Analytic and Computational Challenges in the Identification of the Genetic Variation Contributing to Complex Genetic Disorders.


Academic Year 1998-1999